Harmonization and translation of crop modeling data to ensure interoperability : Agricultural Systems Modelling and Software - Part I
Identifieur interne : 004135 ( Main/Exploration ); précédent : 004134; suivant : 004136Harmonization and translation of crop modeling data to ensure interoperability : Agricultural Systems Modelling and Software - Part I
Auteurs : Cheryl H. Porter [États-Unis] ; Chris Villalobos [États-Unis] ; Dean Holzworth [Australie] ; Roger Nelson [États-Unis] ; Jeffrey W. White [États-Unis] ; Ioannis N. Athanasiadis [Grèce] ; Sander Janssen [Pays-Bas] ; Dominique Ripoche [France] ; Julien Cufi [France] ; Dirk Raes [Belgique] ; MENG ZHANG [États-Unis] ; Rob Knapen [Pays-Bas] ; Ritvik Sahajpa [États-Unis] ; Kenneth Boote [États-Unis] ; James W. Jones [États-Unis]Source :
- Environmental modelling & software [ 1364-8152 ] ; 2014.
Descripteurs français
- Pascal (Inist)
- Wicri :
- topic : Logiciel, Base de données.
English descriptors
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Abstract
The Agricultural Model Intercomparison and Improvement Project (AgMIP) seeks to improve the capability of ecophysiological and economic models to describe the potential impacts of climate change on agricultural systems. AgMIP protocols emphasize the use of multiple models; consequently, data harmonization is essential. This interoperability was achieved by establishing a data exchange mechanism with variables defined in accordance with international standards; implementing a flexibly structured data schema to store experimental data; and designing a method to fill gaps in model-required input data. Researchers and modelers are able to use these tools to run an ensemble of models on a single, harmonized dataset. This allows them to compare models directly, leading ultimately to model improvements. An important outcome is the development of a platform that facilitates researcher collaboration from many organizations, across many countries. This would have been very difficult to achieve without the AgMIP data interoperability standards described in this paper.
Affiliations:
- Australie, Belgique, France, Grèce, Pays-Bas, États-Unis
- Maryland, Province du Brabant flamand
- College Park (Maryland), Heverlee, Louvain
- Université du Maryland
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Porter</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Agricultural & Biological Engineering, University of Florida, PO Box 110570</s1><s2>Gainesville, FL 32611</s2><s3>USA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>11 aut.</sZ><sZ>14 aut.</sZ><sZ>15 aut.</sZ></inist:fA14><country>États-Unis</country><wicri:noRegion>Gainesville, FL 32611</wicri:noRegion></affiliation></author><author><name sortKey="Villalobos, Chris" sort="Villalobos, Chris" uniqKey="Villalobos C" first="Chris" last="Villalobos">Chris Villalobos</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Agricultural & Biological Engineering, University of Florida, PO Box 110570</s1><s2>Gainesville, FL 32611</s2><s3>USA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>11 aut.</sZ><sZ>14 aut.</sZ><sZ>15 aut.</sZ></inist:fA14><country>États-Unis</country><wicri:noRegion>Gainesville, FL 32611</wicri:noRegion></affiliation></author><author><name sortKey="Holzworth, Dean" sort="Holzworth, Dean" uniqKey="Holzworth D" first="Dean" last="Holzworth">Dean Holzworth</name><affiliation wicri:level="1"><inist:fA14 i1="02"><s1>CSIRO Ecosystem Sciences, Sustainable Agriculture Flagship, PO Box 102</s1><s2>Toowoomba, 4350 Qld</s2><s3>AUS</s3><sZ>3 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Toowoomba, 4350 Qld</wicri:noRegion></affiliation></author><author><name sortKey="Nelson, Roger" sort="Nelson, Roger" uniqKey="Nelson R" first="Roger" last="Nelson">Roger Nelson</name><affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Washington State University, Biological Systems Engr., PO Box 646120</s1><s2>Pullman, WA 99164-6120</s2><s3>USA</s3><sZ>4 aut.</sZ></inist:fA14><country>États-Unis</country><wicri:noRegion>Pullman, WA 99164-6120</wicri:noRegion></affiliation></author><author><name sortKey="White, Jeffrey W" sort="White, Jeffrey W" uniqKey="White J" first="Jeffrey W." last="White">Jeffrey W. 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Faculty of Bioscience Engineering, Department of Earth and Environmental Sciences, Division of Soil and Water Management, Celestijnenlaan 200E, Post Box 02411</s1><s2>3001 Leuven</s2><s3>BEL</s3><sZ>10 aut.</sZ></inist:fA14><country>Belgique</country><placeName><region type="province" nuts="2">Province du Brabant flamand</region><settlement type="town">Heverlee</settlement><settlement type="city">Louvain</settlement></placeName></affiliation></author><author><name sortKey="Meng Zhang" sort="Meng Zhang" uniqKey="Meng Zhang" last="Meng Zhang">MENG ZHANG</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Agricultural & Biological Engineering, University of Florida, PO Box 110570</s1><s2>Gainesville, FL 32611</s2><s3>USA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>11 aut.</sZ><sZ>14 aut.</sZ><sZ>15 aut.</sZ></inist:fA14><country>États-Unis</country><wicri:noRegion>Gainesville, FL 32611</wicri:noRegion></affiliation></author><author><name sortKey="Knapen, Rob" sort="Knapen, Rob" uniqKey="Knapen R" first="Rob" last="Knapen">Rob Knapen</name><affiliation wicri:level="1"><inist:fA14 i1="06"><s1>A/terra, Postbus 47</s1><s2>6700AA Wageningen</s2><s3>NLD</s3><sZ>7 aut.</sZ><sZ>12 aut.</sZ></inist:fA14><country>Pays-Bas</country><wicri:noRegion>6700AA Wageningen</wicri:noRegion></affiliation></author><author><name sortKey="Sahajpa, Ritvik" sort="Sahajpa, Ritvik" uniqKey="Sahajpa R" first="Ritvik" last="Sahajpa">Ritvik Sahajpa</name><affiliation wicri:level="4"><inist:fA14 i1="09"><s1>Department of Geographical Sciences, University of Maryland</s1><s2>College Park, MD 20740</s2><s3>USA</s3><sZ>13 aut.</sZ></inist:fA14><country>États-Unis</country><placeName><settlement type="city">College Park (Maryland)</settlement><region type="state">Maryland</region></placeName><orgName type="university">Université du Maryland</orgName></affiliation></author><author><name sortKey="Boote, Kenneth" sort="Boote, Kenneth" uniqKey="Boote K" first="Kenneth" last="Boote">Kenneth Boote</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Agricultural & Biological Engineering, University of Florida, PO Box 110570</s1><s2>Gainesville, FL 32611</s2><s3>USA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>11 aut.</sZ><sZ>14 aut.</sZ><sZ>15 aut.</sZ></inist:fA14><country>États-Unis</country><wicri:noRegion>Gainesville, FL 32611</wicri:noRegion></affiliation></author><author><name sortKey="Jones, James W" sort="Jones, James W" uniqKey="Jones J" first="James W." last="Jones">James W. Jones</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Agricultural & Biological Engineering, University of Florida, PO Box 110570</s1><s2>Gainesville, FL 32611</s2><s3>USA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>11 aut.</sZ><sZ>14 aut.</sZ><sZ>15 aut.</sZ></inist:fA14><country>États-Unis</country><wicri:noRegion>Gainesville, FL 32611</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">INIST</idno><idno type="inist">15-0019904</idno><date when="2014">2014</date><idno type="stanalyst">PASCAL 15-0019904 INIST</idno><idno type="RBID">Pascal:15-0019904</idno><idno type="wicri:Area/PascalFrancis/Corpus">000101</idno><idno type="wicri:Area/PascalFrancis/Curation">005D52</idno><idno type="wicri:Area/PascalFrancis/Checkpoint">000274</idno><idno type="wicri:explorRef" wicri:stream="PascalFrancis" wicri:step="Checkpoint">000274</idno><idno type="wicri:doubleKey">1364-8152:2014:Porter C:harmonization:and:translation</idno><idno type="wicri:Area/Main/Merge">004198</idno><idno type="wicri:Area/Main/Curation">004135</idno><idno type="wicri:Area/Main/Exploration">004135</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">Harmonization and translation of crop modeling data to ensure interoperability : Agricultural Systems Modelling and Software - Part I</title><author><name sortKey="Porter, Cheryl H" sort="Porter, Cheryl H" uniqKey="Porter C" first="Cheryl H." last="Porter">Cheryl H. Porter</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Agricultural & Biological Engineering, University of Florida, PO Box 110570</s1><s2>Gainesville, FL 32611</s2><s3>USA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>11 aut.</sZ><sZ>14 aut.</sZ><sZ>15 aut.</sZ></inist:fA14><country>États-Unis</country><wicri:noRegion>Gainesville, FL 32611</wicri:noRegion></affiliation></author><author><name sortKey="Villalobos, Chris" sort="Villalobos, Chris" uniqKey="Villalobos C" first="Chris" last="Villalobos">Chris Villalobos</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Agricultural & Biological Engineering, University of Florida, PO Box 110570</s1><s2>Gainesville, FL 32611</s2><s3>USA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>11 aut.</sZ><sZ>14 aut.</sZ><sZ>15 aut.</sZ></inist:fA14><country>États-Unis</country><wicri:noRegion>Gainesville, FL 32611</wicri:noRegion></affiliation></author><author><name sortKey="Holzworth, Dean" sort="Holzworth, Dean" uniqKey="Holzworth D" first="Dean" last="Holzworth">Dean Holzworth</name><affiliation wicri:level="1"><inist:fA14 i1="02"><s1>CSIRO Ecosystem Sciences, Sustainable Agriculture Flagship, PO Box 102</s1><s2>Toowoomba, 4350 Qld</s2><s3>AUS</s3><sZ>3 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Toowoomba, 4350 Qld</wicri:noRegion></affiliation></author><author><name sortKey="Nelson, Roger" sort="Nelson, Roger" uniqKey="Nelson R" first="Roger" last="Nelson">Roger Nelson</name><affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Washington State University, Biological Systems Engr., PO Box 646120</s1><s2>Pullman, WA 99164-6120</s2><s3>USA</s3><sZ>4 aut.</sZ></inist:fA14><country>États-Unis</country><wicri:noRegion>Pullman, WA 99164-6120</wicri:noRegion></affiliation></author><author><name sortKey="White, Jeffrey W" sort="White, Jeffrey W" uniqKey="White J" first="Jeffrey W." last="White">Jeffrey W. White</name><affiliation wicri:level="1"><inist:fA14 i1="04"><s1>USDA ARS, ALARC, 21881 North Cardon Lane</s1><s2>Maricopa, AZ 85138</s2><s3>USA</s3><sZ>5 aut.</sZ></inist:fA14><country>États-Unis</country><wicri:noRegion>Maricopa, AZ 85138</wicri:noRegion></affiliation></author><author><name sortKey="Athanasiadis, Ioannis N" sort="Athanasiadis, Ioannis N" uniqKey="Athanasiadis I" first="Ioannis N." last="Athanasiadis">Ioannis N. Athanasiadis</name><affiliation wicri:level="1"><inist:fA14 i1="05"><s1>Democritus University of Thrace, Greece, Elec & Comp Eng, Building A</s1><s2>671 00 Xanthi</s2><s3>GRC</s3><sZ>6 aut.</sZ></inist:fA14><country>Grèce</country><wicri:noRegion>671 00 Xanthi</wicri:noRegion></affiliation></author><author><name sortKey="Janssen, Sander" sort="Janssen, Sander" uniqKey="Janssen S" first="Sander" last="Janssen">Sander Janssen</name><affiliation wicri:level="1"><inist:fA14 i1="06"><s1>A/terra, Postbus 47</s1><s2>6700AA Wageningen</s2><s3>NLD</s3><sZ>7 aut.</sZ><sZ>12 aut.</sZ></inist:fA14><country>Pays-Bas</country><wicri:noRegion>6700AA Wageningen</wicri:noRegion></affiliation></author><author><name sortKey="Ripoche, Dominique" sort="Ripoche, Dominique" uniqKey="Ripoche D" first="Dominique" last="Ripoche">Dominique Ripoche</name><affiliation wicri:level="1"><inist:fA14 i1="07"><s1>INRA, US1116 AGROCLIM, Centre de Recherche PACA, 228, Route de l'Aérodrome, CS 40 509, Domaine Saint Paul, Site Agroparc</s1><s2>84914 Avignon</s2><s3>FRA</s3><sZ>8 aut.</sZ><sZ>9 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>84914 Avignon</wicri:noRegion><wicri:noRegion>Site Agroparc</wicri:noRegion><wicri:noRegion>84914 Avignon</wicri:noRegion></affiliation></author><author><name sortKey="Cufi, Julien" sort="Cufi, Julien" uniqKey="Cufi J" first="Julien" last="Cufi">Julien Cufi</name><affiliation wicri:level="1"><inist:fA14 i1="07"><s1>INRA, US1116 AGROCLIM, Centre de Recherche PACA, 228, Route de l'Aérodrome, CS 40 509, Domaine Saint Paul, Site Agroparc</s1><s2>84914 Avignon</s2><s3>FRA</s3><sZ>8 aut.</sZ><sZ>9 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>84914 Avignon</wicri:noRegion><wicri:noRegion>Site Agroparc</wicri:noRegion><wicri:noRegion>84914 Avignon</wicri:noRegion></affiliation></author><author><name sortKey="Raes, Dirk" sort="Raes, Dirk" uniqKey="Raes D" first="Dirk" last="Raes">Dirk Raes</name><affiliation wicri:level="3"><inist:fA14 i1="08"><s1>KU Leuven University. Faculty of Bioscience Engineering, Department of Earth and Environmental Sciences, Division of Soil and Water Management, Celestijnenlaan 200E, Post Box 02411</s1><s2>3001 Leuven</s2><s3>BEL</s3><sZ>10 aut.</sZ></inist:fA14><country>Belgique</country><placeName><region type="province" nuts="2">Province du Brabant flamand</region><settlement type="town">Heverlee</settlement><settlement type="city">Louvain</settlement></placeName></affiliation></author><author><name sortKey="Meng Zhang" sort="Meng Zhang" uniqKey="Meng Zhang" last="Meng Zhang">MENG ZHANG</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Agricultural & Biological Engineering, University of Florida, PO Box 110570</s1><s2>Gainesville, FL 32611</s2><s3>USA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>11 aut.</sZ><sZ>14 aut.</sZ><sZ>15 aut.</sZ></inist:fA14><country>États-Unis</country><wicri:noRegion>Gainesville, FL 32611</wicri:noRegion></affiliation></author><author><name sortKey="Knapen, Rob" sort="Knapen, Rob" uniqKey="Knapen R" first="Rob" last="Knapen">Rob Knapen</name><affiliation wicri:level="1"><inist:fA14 i1="06"><s1>A/terra, Postbus 47</s1><s2>6700AA Wageningen</s2><s3>NLD</s3><sZ>7 aut.</sZ><sZ>12 aut.</sZ></inist:fA14><country>Pays-Bas</country><wicri:noRegion>6700AA Wageningen</wicri:noRegion></affiliation></author><author><name sortKey="Sahajpa, Ritvik" sort="Sahajpa, Ritvik" uniqKey="Sahajpa R" first="Ritvik" last="Sahajpa">Ritvik Sahajpa</name><affiliation wicri:level="4"><inist:fA14 i1="09"><s1>Department of Geographical Sciences, University of Maryland</s1><s2>College Park, MD 20740</s2><s3>USA</s3><sZ>13 aut.</sZ></inist:fA14><country>États-Unis</country><placeName><settlement type="city">College Park (Maryland)</settlement><region type="state">Maryland</region></placeName><orgName type="university">Université du Maryland</orgName></affiliation></author><author><name sortKey="Boote, Kenneth" sort="Boote, Kenneth" uniqKey="Boote K" first="Kenneth" last="Boote">Kenneth Boote</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Agricultural & Biological Engineering, University of Florida, PO Box 110570</s1><s2>Gainesville, FL 32611</s2><s3>USA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>11 aut.</sZ><sZ>14 aut.</sZ><sZ>15 aut.</sZ></inist:fA14><country>États-Unis</country><wicri:noRegion>Gainesville, FL 32611</wicri:noRegion></affiliation></author><author><name sortKey="Jones, James W" sort="Jones, James W" uniqKey="Jones J" first="James W." last="Jones">James W. Jones</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Agricultural & Biological Engineering, University of Florida, PO Box 110570</s1><s2>Gainesville, FL 32611</s2><s3>USA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>11 aut.</sZ><sZ>14 aut.</sZ><sZ>15 aut.</sZ></inist:fA14><country>États-Unis</country><wicri:noRegion>Gainesville, FL 32611</wicri:noRegion></affiliation></author></analytic><series><title level="j" type="main">Environmental modelling & software</title><title level="j" type="abbreviated">Environ. model. softw.</title><idno type="ISSN">1364-8152</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc><seriesStmt><title level="j" type="main">Environmental modelling & software</title><title level="j" type="abbreviated">Environ. model. softw.</title><idno type="ISSN">1364-8152</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Database</term><term>Modeling</term><term>Models</term><term>Software</term><term>Translation</term></keywords><keywords scheme="Pascal" xml:lang="fr"><term>Translation</term><term>Modélisation</term><term>Modèle</term><term>Logiciel</term><term>Base de données</term></keywords><keywords scheme="Wicri" type="topic" xml:lang="fr"><term>Logiciel</term><term>Base de données</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The Agricultural Model Intercomparison and Improvement Project (AgMIP) seeks to improve the capability of ecophysiological and economic models to describe the potential impacts of climate change on agricultural systems. AgMIP protocols emphasize the use of multiple models; consequently, data harmonization is essential. This interoperability was achieved by establishing a data exchange mechanism with variables defined in accordance with international standards; implementing a flexibly structured data schema to store experimental data; and designing a method to fill gaps in model-required input data. Researchers and modelers are able to use these tools to run an ensemble of models on a single, harmonized dataset. This allows them to compare models directly, leading ultimately to model improvements. An important outcome is the development of a platform that facilitates researcher collaboration from many organizations, across many countries. This would have been very difficult to achieve without the AgMIP data interoperability standards described in this paper.</div></front></TEI><affiliations><list><country><li>Australie</li><li>Belgique</li><li>France</li><li>Grèce</li><li>Pays-Bas</li><li>États-Unis</li></country><region><li>Maryland</li><li>Province du Brabant flamand</li></region><settlement><li>College Park (Maryland)</li><li>Heverlee</li><li>Louvain</li></settlement><orgName><li>Université du Maryland</li></orgName></list><tree><country name="États-Unis"><noRegion><name sortKey="Porter, Cheryl H" sort="Porter, Cheryl H" uniqKey="Porter C" first="Cheryl H." last="Porter">Cheryl H. Porter</name></noRegion><name sortKey="Boote, Kenneth" sort="Boote, Kenneth" uniqKey="Boote K" first="Kenneth" last="Boote">Kenneth Boote</name><name sortKey="Jones, James W" sort="Jones, James W" uniqKey="Jones J" first="James W." last="Jones">James W. Jones</name><name sortKey="Meng Zhang" sort="Meng Zhang" uniqKey="Meng Zhang" last="Meng Zhang">MENG ZHANG</name><name sortKey="Nelson, Roger" sort="Nelson, Roger" uniqKey="Nelson R" first="Roger" last="Nelson">Roger Nelson</name><name sortKey="Sahajpa, Ritvik" sort="Sahajpa, Ritvik" uniqKey="Sahajpa R" first="Ritvik" last="Sahajpa">Ritvik Sahajpa</name><name sortKey="Villalobos, Chris" sort="Villalobos, Chris" uniqKey="Villalobos C" first="Chris" last="Villalobos">Chris Villalobos</name><name sortKey="White, Jeffrey W" sort="White, Jeffrey W" uniqKey="White J" first="Jeffrey W." last="White">Jeffrey W. White</name></country><country name="Australie"><noRegion><name sortKey="Holzworth, Dean" sort="Holzworth, Dean" uniqKey="Holzworth D" first="Dean" last="Holzworth">Dean Holzworth</name></noRegion></country><country name="Grèce"><noRegion><name sortKey="Athanasiadis, Ioannis N" sort="Athanasiadis, Ioannis N" uniqKey="Athanasiadis I" first="Ioannis N." last="Athanasiadis">Ioannis N. Athanasiadis</name></noRegion></country><country name="Pays-Bas"><noRegion><name sortKey="Janssen, Sander" sort="Janssen, Sander" uniqKey="Janssen S" first="Sander" last="Janssen">Sander Janssen</name></noRegion><name sortKey="Knapen, Rob" sort="Knapen, Rob" uniqKey="Knapen R" first="Rob" last="Knapen">Rob Knapen</name></country><country name="France"><noRegion><name sortKey="Ripoche, Dominique" sort="Ripoche, Dominique" uniqKey="Ripoche D" first="Dominique" last="Ripoche">Dominique Ripoche</name></noRegion><name sortKey="Cufi, Julien" sort="Cufi, Julien" uniqKey="Cufi J" first="Julien" last="Cufi">Julien Cufi</name></country><country name="Belgique"><region name="Province du Brabant flamand"><name sortKey="Raes, Dirk" sort="Raes, Dirk" uniqKey="Raes D" first="Dirk" last="Raes">Dirk Raes</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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